IL_8C3A_088

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUGG*UGUUGACA

Length

14 nucleotides

Bulged bases

8C3A|1|1|U|2137, 8C3A|1|1|U|2153, 8C3A|1|1|C|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|U|2134
8C3A|1|1|G|2135
8C3A|1|1|A|2136
8C3A|1|1|U|2137
8C3A|1|1|G|2138
8C3A|1|1|G|2139
*
8C3A|1|1|U|2151
8C3A|1|1|G|2152
8C3A|1|1|U|2153
8C3A|1|1|U|2154
8C3A|1|1|G|2155
8C3A|1|1|A|2156
8C3A|1|1|C|2157
8C3A|1|1|A|2158

Current chains

Chain 1

25S

Nearby chains

Chain AQ

60S ribosomal protein L43-A

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain j

60S ribosomal protein L2-B