IL_6GZ5_178
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_178 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1722
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6GZ5|1|A4|G|71
6GZ5|1|A4|U|72
6GZ5|1|A4|U|73
6GZ5|1|A4|A|74
6GZ5|1|A4|G|75
6GZ5|1|A4|U|76
6GZ5|1|A4|A|77
6GZ5|1|A4|C|78
*
6GZ5|1|A4|G|98
6GZ5|1|A4|G|99
6GZ5|1|A4|A|100
6GZ5|1|A4|A|101
6GZ5|1|A4|U|102
6GZ5|1|A4|A|103
6GZ5|1|A4|C|104
Current chains
- Chain A4
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- ribosomal protein uL18
- Chain AF
- ribosomal protein uL30
- Chain AI
- ribosomal protein uL16
- Chain AS
- ribosomal protein eL20
- Chain AT
- ribosomal protein eL21
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