IL_6GZ5_210

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_210 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2189

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6GZ5|1|B1|G|665
6GZ5|1|B1|U|666
6GZ5|1|B1|U|667
6GZ5|1|B1|A|668
6GZ5|1|B1|A|669
6GZ5|1|B1|A|670
6GZ5|1|B1|A|671
*
6GZ5|1|B1|U|1161
6GZ5|1|B1|C|1162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BX

ribosomal protein uS12

Chain Ba

ribosomal protein eS26