IL_6GZ5_248

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_248 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3326

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6GZ5|1|B1|C|1412
6GZ5|1|B1|G|1413
6GZ5|1|B1|A|1414
6GZ5|1|B1|C|1415
*
6GZ5|1|B1|G|1422
6GZ5|1|B1|C|1423
6GZ5|1|B1|G|1424
6GZ5|1|B1|G|1425

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

ribosomal protein uS9

Chain BT

ribosomal protein eS19