IL_6GZQ_001

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_001 not in the Motif Atlas

Homologous match to IL_7A0S_001

Geometric discrepancy: 0.1646

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|G|24
6GZQ|1|A1|U|25
6GZQ|1|A1|G|26
6GZQ|1|A1|G|27
6GZQ|1|A1|A|28
6GZQ|1|A1|U|29
6GZQ|1|A1|G|30
*
6GZQ|1|A1|C|537
6GZQ|1|A1|U|538
6GZQ|1|A1|G|539
6GZQ|1|A1|A|540
6GZQ|1|A1|A|541
6GZQ|1|A1|A|542
6GZQ|1|A1|C|543

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain R1

50S ribosomal protein L22

Chain a1

50S ribosomal protein L32