IL_6GZQ_026

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6GZQ|1|A1|C|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_026 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.1597

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6GZQ|1|A1|C|1042
6GZQ|1|A1|C|1043
6GZQ|1|A1|A|1044
*
6GZQ|1|A1|U|1207
6GZQ|1|A1|G|1208

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain I1

50S ribosomal protein L13

Chain P1

50S ribosomal protein L20

Chain Q1

50S ribosomal protein L21

Chain Y1

50S ribosomal protein L30