IL_6GZQ_100

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6GZQ|1|A2|U|239, 6GZQ|1|A2|C|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_100 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1918

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A2|C|237
6GZQ|1|A2|A|238
6GZQ|1|A2|U|239
6GZQ|1|A2|C|240
6GZQ|1|A2|A|241
6GZQ|1|A2|G|242
*
6GZQ|1|A2|C|272
6GZQ|1|A2|G|273
6GZQ|1|A2|A|274
6GZQ|1|A2|C|275
6GZQ|1|A2|G|276
6GZQ|1|A2|A|277
6GZQ|1|A2|C|278
6GZQ|1|A2|G|279

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

30S ribosomal protein S12

Chain Q2

30S ribosomal protein S17