IL_6GZQ_128

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6GZQ|1|A2|U|1238, 6GZQ|1|A2|A|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_128 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.4322

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A2|G|1236
6GZQ|1|A2|A|1237
6GZQ|1|A2|U|1238
6GZQ|1|A2|G|1239
*
6GZQ|1|A2|C|1258
6GZQ|1|A2|U|1259
6GZQ|1|A2|A|1260
6GZQ|1|A2|A|1261
6GZQ|1|A2|U|1262
6GZQ|1|A2|C|1263

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain C2

30S ribosomal protein S3

Chain J2

30S ribosomal protein S10

Chain N2

30S ribosomal protein S14 type Z