IL_6GZQ_130

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_130 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.2652

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6GZQ|1|A2|C|1284
6GZQ|1|A2|G|1285
6GZQ|1|A2|G|1286
6GZQ|1|A2|A|1287
6GZQ|1|A2|U|1288
6GZQ|1|A2|U|1289
*
6GZQ|1|A2|A|1310
6GZQ|1|A2|U|1311
6GZQ|1|A2|G|1312
6GZQ|1|A2|A|1313
6GZQ|1|A2|A|1314
6GZQ|1|A2|G|1315

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain M2

30S ribosomal protein S13

Chain U2

30S ribosomal protein Thx