IL_6GZQ_194

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

6GZQ|1|A1|U|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_194 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1623

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6GZQ|1|A1|C|2694
6GZQ|1|A1|C|2695
6GZQ|1|A1|U|2696
6GZQ|1|A1|C|2697
6GZQ|1|A1|U|2698
*
6GZQ|1|A1|A|2740
6GZQ|1|A1|U|2741
6GZQ|1|A1|G|2742

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain J1

50S ribosomal protein L14

Chain O1

50S ribosomal protein L19