IL_6GZX_006

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGUGAAG*UGGAGGCCC

Length

17 nucleotides

Bulged bases

6GZX|1|A1|G|778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_006 not in the Motif Atlas

Geometric match to IL_4WF9_119

Geometric discrepancy: 0.3725

The information below is about IL_4WF9_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00087.1

Basepair signature

cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6GZX|1|A1|G|749
6GZX|1|A1|G|750
6GZX|1|A1|G|751
6GZX|1|A1|U|752
6GZX|1|A1|G|753
6GZX|1|A1|A|754
6GZX|1|A1|A|755
6GZX|1|A1|G|756
*
6GZX|1|A1|U|773
6GZX|1|A1|G|774
6GZX|1|A1|G|775
6GZX|1|A1|A|776
6GZX|1|A1|G|777
6GZX|1|A1|G|778
6GZX|1|A1|C|779
6GZX|1|A1|C|780
6GZX|1|A1|C|781

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2