IL_6GZX_010

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6GZX|1|A1|G|979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_010 not in the Motif Atlas

Geometric match to IL_9DFE_024

Geometric discrepancy: 0.3303

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZX|1|A1|C|893
6GZX|1|A1|G|894
6GZX|1|A1|C|895
6GZX|1|A1|U|896
6GZX|1|A1|G|897
6GZX|1|A1|A|898
6GZX|1|A1|C|899
*
6GZX|1|A1|G|975
6GZX|1|A1|G|976
6GZX|1|A1|U|977
6GZX|1|A1|G|978
6GZX|1|A1|G|979
6GZX|1|A1|A|980
6GZX|1|A1|G|981

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L30