IL_6GZX_013

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCACUG*CAAAC

Length

11 nucleotides

Bulged bases

6GZX|1|A1|A|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_013 not in the Motif Atlas

Geometric match to IL_4V9F_035

Geometric discrepancy: 0.3813

The information below is about IL_4V9F_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6GZX|1|A1|G|913
6GZX|1|A1|C|914
6GZX|1|A1|A|915
6GZX|1|A1|C|916
6GZX|1|A1|U|917
6GZX|1|A1|G|918
*
6GZX|1|A1|C|956
6GZX|1|A1|A|957
6GZX|1|A1|A|958
6GZX|1|A1|A|959
6GZX|1|A1|C|960

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain L1

50S ribosomal protein L16

Chain U1

50S ribosomal protein L25