IL_6GZX_040
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6GZX|1|A1|A|1962, 6GZX|1|A1|U|1968, 6GZX|1|A1|U|1987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZX_040 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.2542
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
6GZX|1|A1|C|1958
6GZX|1|A1|G|1959
6GZX|1|A1|A|1960
6GZX|1|A1|A|1961
6GZX|1|A1|A|1962
6GZX|1|A1|U|1963
6GZX|1|A1|U|1964
6GZX|1|A1|C|1965
6GZX|1|A1|C|1966
6GZX|1|A1|U|1967
6GZX|1|A1|U|1968
6GZX|1|A1|G|1969
*
6GZX|1|A1|C|1985
6GZX|1|A1|C|1986
6GZX|1|A1|U|1987
6GZX|1|A1|G|1988
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain A3
- Small subunit ribosomal RNA; SSU rRNA
- Chain C1
- 50S ribosomal protein L2
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