IL_6GZX_060

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGC*GUCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_060 not in the Motif Atlas

Geometric match to IL_7A0S_102

Geometric discrepancy: 0.3987

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6GZX|1|A1|G|2849
6GZX|1|A1|G|2850
6GZX|1|A1|G|2851
6GZX|1|A1|C|2852
*
6GZX|1|A1|G|2889
6GZX|1|A1|U|2890
6GZX|1|A1|C|2891
6GZX|1|A1|C|2892
6GZX|1|A1|C|2893

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17

Chain O1

50S ribosomal protein L19