IL_6GZX_089

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_089 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.3806

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6GZX|1|A2|U|1405
6GZX|1|A2|G|1406
6GZX|1|A2|A|1407
6GZX|1|A2|A|1408
6GZX|1|A2|G|1409
*
6GZX|1|A2|C|1418
6GZX|1|A2|G|1419
6GZX|1|A2|U|1420
6GZX|1|A2|A|1421
6GZX|1|A2|G|1422

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain W2

50S ribosomal protein L28

Chain c2

50S ribosomal protein L34