IL_6GZX_119

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCUGA*UGGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_119 not in the Motif Atlas

Geometric match to IL_1J2B_001

Geometric discrepancy: 0.3888

The information below is about IL_1J2B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69301.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6GZX|1|A2|G|2469
6GZX|1|A2|C|2470
6GZX|1|A2|U|2471
6GZX|1|A2|G|2472
6GZX|1|A2|A|2473
*
6GZX|1|A2|U|2507
6GZX|1|A2|G|2508
6GZX|1|A2|G|2509
6GZX|1|A2|C|2510

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L16