IL_6GZX_121

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_121 not in the Motif Atlas

Geometric match to IL_7RQB_095

Geometric discrepancy: 0.3376

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6GZX|1|A2|C|2480
6GZX|1|A2|C|2481
6GZX|1|A2|G|2482
6GZX|1|A2|A|2483
6GZX|1|A2|G|2484
*
6GZX|1|A2|C|2494
6GZX|1|A2|G|2495
6GZX|1|A2|G|2496
6GZX|1|A2|C|2497
6GZX|1|A2|G|2498

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L16

Chain e2

50S ribosomal protein L36