IL_6GZX_127

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

6GZX|1|A2|U|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_127 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.3387

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6GZX|1|A2|C|2694
6GZX|1|A2|C|2695
6GZX|1|A2|U|2696
6GZX|1|A2|C|2697
6GZX|1|A2|U|2698
*
6GZX|1|A2|A|2740
6GZX|1|A2|U|2741
6GZX|1|A2|G|2742

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L14

Chain O2

50S ribosomal protein L19