IL_6GZX_136

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGUGAC*GGCC

Length

10 nucleotides

Bulged bases

6GZX|1|A3|G|123, 6GZX|1|A3|A|124

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_136 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3458

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6GZX|1|A3|G|120
6GZX|1|A3|G|121
6GZX|1|A3|U|122
6GZX|1|A3|G|123
6GZX|1|A3|A|124
6GZX|1|A3|C|125
*
6GZX|1|A3|G|226
6GZX|1|A3|G|227
6GZX|1|A3|C|228
6GZX|1|A3|C|229

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain P3

30S ribosomal protein S16

Chain Q3

30S ribosomal protein S17

Chain T3

30S ribosomal protein S20