IL_6GZX_143
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GZX|1|A3|A|515, 6GZX|1|A3|U|517, 6GZX|1|A3|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZX_143 not in the Motif Atlas
- Geometric match to IL_6CZR_133
- Geometric discrepancy: 0.3907
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GZX|1|A3|G|498
6GZX|1|A3|U|499
6GZX|1|A3|G|500
6GZX|1|A3|C|501
6GZX|1|A3|C|502
6GZX|1|A3|A|503
6GZX|1|A3|G|504
*
6GZX|1|A3|C|511
6GZX|1|A3|G|512
6GZX|1|A3|G|513
6GZX|1|A3|U|514
6GZX|1|A3|A|515
6GZX|1|A3|A|516
6GZX|1|A3|U|517
6GZX|1|A3|A|518
6GZX|1|A3|C|519
Current chains
- Chain A3
- 16S ribosomal RNA
Nearby chains
- Chain C3
- 30S ribosomal protein S3
- Chain D3
- 30S ribosomal protein S4
- Chain L3
- 30S ribosomal protein S12
- Chain V3
- Ribosome hibernation promoting factor
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