IL_6GZX_162

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_162 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3865

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6GZX|1|A3|C|1394
6GZX|1|A3|A|1395
6GZX|1|A3|U|1396
6GZX|1|A3|G|1397
6GZX|1|A3|G|1398
*
6GZX|1|A3|C|1461
6GZX|1|A3|U|1462
6GZX|1|A3|G|1463
6GZX|1|A3|G|1464
6GZX|1|A3|G|1465

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain L3

30S ribosomal protein S12