IL_6GZX_172

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6GZX|1|A4|G|123, 6GZX|1|A4|A|124

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_172 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.5379

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6GZX|1|A4|U|122
6GZX|1|A4|G|123
6GZX|1|A4|A|124
6GZX|1|A4|C|125
*
6GZX|1|A4|G|226
6GZX|1|A4|G|227

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16

Chain Q4

30S ribosomal protein S17

Chain T4

30S ribosomal protein S20