IL_6GZX_176

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_176 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.2941

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GZX|1|A4|G|440
6GZX|1|A4|G|441
6GZX|1|A4|A|442
6GZX|1|A4|C|443
6GZX|1|A4|G|444
*
6GZX|1|A4|C|467
6GZX|1|A4|G|468
6GZX|1|A4|G|469
6GZX|1|A4|U|470
6GZX|1|A4|A|471
6GZX|1|A4|C|472

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain P4

30S ribosomal protein S16