IL_6GZX_177

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_177 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.381

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6GZX|1|A4|G|444
6GZX|1|A4|A|445
6GZX|1|A4|A|446
6GZX|1|A4|A|447
6GZX|1|A4|C|448
6GZX|1|A4|C|449
*
6GZX|1|A4|G|461
6GZX|1|A4|A|462
6GZX|1|A4|C|463
6GZX|1|A4|U|464
6GZX|1|A4|G|465
6GZX|1|A4|A|466
6GZX|1|A4|C|467

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16