IL_6GZX_182

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_182 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.5108

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

6GZX|1|A4|G|580
6GZX|1|A4|U|581
6GZX|1|A4|C|582
*
6GZX|1|A4|G|622
6GZX|1|A4|A|623
6GZX|1|A4|U|624
6GZX|1|A4|A|625
6GZX|1|A4|C|626

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain H4

30S ribosomal protein S8

Chain Q4

30S ribosomal protein S17