IL_6GZX_197
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZX_197 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.3585
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6GZX|1|B2|U|36
6GZX|1|B2|U|37
6GZX|1|B2|C|38
6GZX|1|B2|C|39
6GZX|1|B2|C|40
*
6GZX|1|B2|G|46
6GZX|1|B2|A|47
6GZX|1|B2|A|48
6GZX|1|B2|C|49
6GZX|1|B2|A|50
Current chains
- Chain B2
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain F2
- 50S ribosomal protein L5
- Chain N2
- 50S ribosomal protein L18
- Chain Z2
- 50S ribosomal protein L31
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