IL_6GZX_214

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GAGC*GUUACC

Length

10 nucleotides

Bulged bases

6GZX|1|A1|A|2453

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_214 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3427

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6GZX|1|A1|G|2094
6GZX|1|A1|A|2095
6GZX|1|A1|G|2096
6GZX|1|A1|C|2097
*
6GZX|1|A1|G|2450
6GZX|1|A1|U|2451
6GZX|1|A1|U|2452
6GZX|1|A1|A|2453
6GZX|1|A1|C|2454
6GZX|1|A1|C|2455

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2