IL_6GZX_215

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGAGG*CCUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_215 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3725

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6GZX|1|A1|G|2644
6GZX|1|A1|G|2645
6GZX|1|A1|A|2646
6GZX|1|A1|G|2647
6GZX|1|A1|G|2648
*
6GZX|1|A1|C|2799
6GZX|1|A1|C|2800
6GZX|1|A1|U|2801
6GZX|1|A1|C|2802
6GZX|1|A1|C|2803

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3