IL_6GZX_226

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGACCC*GGGCG

Length

11 nucleotides

Bulged bases

6GZX|1|A2|A|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_226 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3818

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6GZX|1|A2|C|1265
6GZX|1|A2|G|1266
6GZX|1|A2|A|1267
6GZX|1|A2|C|1268
6GZX|1|A2|C|1269
6GZX|1|A2|C|1270
*
6GZX|1|A2|G|1275
6GZX|1|A2|G|1276
6GZX|1|A2|G|1277
6GZX|1|A2|C|1278
6GZX|1|A2|G|1279

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21