IL_6GZX_245

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGCCGGCCAAC*GGGCGC

Length

18 nucleotides

Bulged bases

6GZX|1|A3|A|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_245 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3779

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6GZX|1|A3|G|483
6GZX|1|A3|C|484
6GZX|1|A3|G|485
6GZX|1|A3|C|486
6GZX|1|A3|C|487
6GZX|1|A3|G|488
6GZX|1|A3|G|489
6GZX|1|A3|C|490
6GZX|1|A3|C|491
6GZX|1|A3|A|492
6GZX|1|A3|A|493
6GZX|1|A3|C|494
*
6GZX|1|A3|G|523
6GZX|1|A3|G|524
6GZX|1|A3|G|525
6GZX|1|A3|C|526
6GZX|1|A3|G|527
6GZX|1|A3|C|528

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain D3

30S ribosomal protein S4

Chain E3

30S ribosomal protein S5

Chain L3

30S ribosomal protein S12