IL_6GZX_276

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6GZX|1|A1|G|1923, 6GZX|1|A1|A|1924

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_276 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.2786

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6GZX|1|A1|U|1874
6GZX|1|A1|G|1875
*
6GZX|1|A1|U|1922
6GZX|1|A1|G|1923
6GZX|1|A1|A|1924
6GZX|1|A1|A|1925

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2