IL_6GZX_280
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- UUUCC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6GZX|1|A1|U|2703, 6GZX|1|A1|C|2704
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZX_280 not in the Motif Atlas
- Homologous match to IL_4WF9_102
- Geometric discrepancy: 0.3335
- The information below is about IL_4WF9_102
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GZX|1|A1|U|2701
6GZX|1|A1|U|2702
6GZX|1|A1|U|2703
6GZX|1|A1|C|2704
6GZX|1|A1|C|2705
*
6GZX|1|A1|G|2733
6GZX|1|A1|G|2734
6GZX|1|A1|U|2735
6GZX|1|A1|A|2736
6GZX|1|A1|G|2737
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L3
- Chain M1
- 50S ribosomal protein L17
- Chain O1
- 50S ribosomal protein L19
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