IL_6GZX_281

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

6GZX|1|A1|A|2727

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_281 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.4516

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6GZX|1|A1|C|2709
6GZX|1|A1|U|2710
*
6GZX|1|A1|A|2725
6GZX|1|A1|U|2726
6GZX|1|A1|A|2727
6GZX|1|A1|A|2728
6GZX|1|A1|G|2729

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17