IL_6GZX_289

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6GZX|1|A2|U|2703, 6GZX|1|A2|C|2704

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_289 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.2605

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6GZX|1|A2|U|2701
6GZX|1|A2|U|2702
6GZX|1|A2|U|2703
6GZX|1|A2|C|2704
6GZX|1|A2|C|2705
*
6GZX|1|A2|G|2733
6GZX|1|A2|G|2734
6GZX|1|A2|U|2735
6GZX|1|A2|A|2736
6GZX|1|A2|G|2737

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain M2

50S ribosomal protein L17

Chain O2

50S ribosomal protein L19