IL_6GZX_290

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAGCU*AUAAGCUG

Length

13 nucleotides

Bulged bases

6GZX|1|A2|U|2726, 6GZX|1|A2|A|2727, 6GZX|1|A2|A|2728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_290 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3836

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6GZX|1|A2|C|2706
6GZX|1|A2|A|2707
6GZX|1|A2|G|2708
6GZX|1|A2|C|2709
6GZX|1|A2|U|2710
*
6GZX|1|A2|A|2725
6GZX|1|A2|U|2726
6GZX|1|A2|A|2727
6GZX|1|A2|A|2728
6GZX|1|A2|G|2729
6GZX|1|A2|C|2730
6GZX|1|A2|U|2731
6GZX|1|A2|G|2732

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain M2

50S ribosomal protein L17

Chain O2

50S ribosomal protein L19