IL_6GZX_297

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUGAA*UUAC

Length

9 nucleotides

Bulged bases

6GZX|1|A4|G|31

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_297 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.2947

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6GZX|1|A4|G|29
6GZX|1|A4|U|30
6GZX|1|A4|G|31
6GZX|1|A4|A|32
6GZX|1|A4|A|33
*
6GZX|1|A4|U|534
6GZX|1|A4|U|535
6GZX|1|A4|A|536
6GZX|1|A4|C|537

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain L4

30S ribosomal protein S12