IL_6GZZ_032

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6GZZ|1|A1|G|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_032 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3814

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6GZZ|1|A1|C|1243
6GZZ|1|A1|G|1244
6GZZ|1|A1|U|1245
*
6GZZ|1|A1|A|1295
6GZZ|1|A1|G|1296
6GZZ|1|A1|U|1297
6GZZ|1|A1|G|1298

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain K1

50S ribosomal protein L15

Chain P1

50S ribosomal protein L20