IL_6GZZ_050

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6GZZ|1|A1|C|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_050 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.2092

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6GZZ|1|A1|C|1870
6GZZ|1|A1|C|1871
6GZZ|1|A1|G|1872
6GZZ|1|A1|G|1873
*
6GZZ|1|A1|C|1926
6GZZ|1|A1|G|1927

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2