IL_6GZZ_058

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

6GZZ|1|A1|G|2252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_058 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.2809

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6GZZ|1|A1|C|2105
6GZZ|1|A1|A|2106
6GZZ|1|A1|G|2107
*
6GZZ|1|A1|C|2250
6GZZ|1|A1|G|2251
6GZZ|1|A1|G|2252
6GZZ|1|A1|G|2253

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain W1

50S ribosomal protein L28