IL_6GZZ_061

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGU*GCCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_061 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3271

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6GZZ|1|A1|G|2303
6GZZ|1|A1|G|2304
6GZZ|1|A1|U|2305
*
6GZZ|1|A1|G|2355
6GZZ|1|A1|C|2356
6GZZ|1|A1|C|2357
6GZZ|1|A1|U|2358

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain N1

50S ribosomal protein L18

Chain b1

50S ribosomal protein L33