IL_6GZZ_064

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_064 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.3105

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A1|C|2480
6GZZ|1|A1|C|2481
6GZZ|1|A1|G|2482
6GZZ|1|A1|A|2483
6GZZ|1|A1|G|2484
*
6GZZ|1|A1|C|2494
6GZZ|1|A1|G|2495
6GZZ|1|A1|G|2496
6GZZ|1|A1|C|2497
6GZZ|1|A1|G|2498

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16

Chain e1

50S ribosomal protein L36