IL_6GZZ_070

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

6GZZ|1|A1|A|2728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_070 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.205

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GZZ|1|A1|C|2709
6GZZ|1|A1|U|2710
*
6GZZ|1|A1|A|2725
6GZZ|1|A1|U|2726
6GZZ|1|A1|A|2727
6GZZ|1|A1|A|2728
6GZZ|1|A1|G|2729

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17

Chain O1

50S ribosomal protein L19