IL_6GZZ_094

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_094 not in the Motif Atlas

Geometric match to IL_7RQB_027

Geometric discrepancy: 0.2945

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GZZ|1|A2|U|907
6GZZ|1|A2|G|908
6GZZ|1|A2|U|909
6GZZ|1|A2|A|910
6GZZ|1|A2|G|911
*
6GZZ|1|A2|C|963
6GZZ|1|A2|G|964
6GZZ|1|A2|A|965
6GZZ|1|A2|A|966
6GZZ|1|A2|G|967

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain L2

50S ribosomal protein L16

Chain V2

50S ribosomal protein L27