IL_6GZZ_104
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 6GZZ|1|A2|A|1175, 6GZZ|1|A2|U|1178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZZ_104 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.2138
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6GZZ|1|A2|G|1072
6GZZ|1|A2|G|1073
6GZZ|1|A2|U|1074
6GZZ|1|A2|A|1075
6GZZ|1|A2|A|1076
6GZZ|1|A2|A|1077
6GZZ|1|A2|G|1078
*
6GZZ|1|A2|C|1172
6GZZ|1|A2|G|1173
6GZZ|1|A2|A|1174
6GZZ|1|A2|A|1175
6GZZ|1|A2|A|1176
6GZZ|1|A2|A|1177
6GZZ|1|A2|U|1178
6GZZ|1|A2|G|1179
6GZZ|1|A2|A|1180
6GZZ|1|A2|U|1181
6GZZ|1|A2|C|1182
6GZZ|1|A2|G|1183
6GZZ|1|A2|G|1184
6GZZ|1|A2|G|1185
6GZZ|1|A2|G|1186
6GZZ|1|A2|C|1187
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain D2
- 50S ribosomal protein L3
- Chain I2
- 50S ribosomal protein L13
- Chain L2
- 50S ribosomal protein L16
- Chain e2
- 50S ribosomal protein L36
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