IL_6GZZ_110

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6GZZ|1|A2|U|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_110 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.3528

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6GZZ|1|A2|C|1255
6GZZ|1|A2|G|1256
6GZZ|1|A2|A|1257
6GZZ|1|A2|U|1258
6GZZ|1|A2|G|1259
6GZZ|1|A2|A|1260
6GZZ|1|A2|A|1261
6GZZ|1|A2|G|1262
*
6GZZ|1|A2|U|1282
6GZZ|1|A2|G|1283
6GZZ|1|A2|G|1284
6GZZ|1|A2|A|1285
6GZZ|1|A2|G|1286

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20