IL_6GZZ_128

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_128 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1807

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6GZZ|1|A2|G|1957
6GZZ|1|A2|C|1958
*
6GZZ|1|A2|G|1988
6GZZ|1|A2|C|1989
6GZZ|1|A2|A|1990
6GZZ|1|A2|C|1991

Current chains

Chain A2

23S ribosomal RNA

Nearby chains