IL_6GZZ_138
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- GGUGG*CCAUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZZ_138 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3667
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6GZZ|1|A2|G|2410
6GZZ|1|A2|G|2411
6GZZ|1|A2|U|2412
6GZZ|1|A2|G|2413
6GZZ|1|A2|G|2414
*
6GZZ|1|A2|C|2430
6GZZ|1|A2|C|2431
6GZZ|1|A2|A|2432
6GZZ|1|A2|U|2433
6GZZ|1|A2|C|2434
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain K2
- 50S ribosomal protein L15
- Chain W2
- 50S ribosomal protein L28
- Chain b2
- 50S ribosomal protein L33
- Chain d2
- 50S ribosomal protein L35
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