IL_6GZZ_145
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZZ_145 not in the Motif Atlas
- Homologous match to IL_7A0S_094
- Geometric discrepancy: 0.4059
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GZZ|1|A2|C|2666
6GZZ|1|A2|U|2667
6GZZ|1|A2|A|2668
6GZZ|1|A2|G|2669
6GZZ|1|A2|U|2670
6GZZ|1|A2|A|2671
6GZZ|1|A2|C|2672
*
6GZZ|1|A2|G|2677
6GZZ|1|A2|G|2678
6GZZ|1|A2|A|2679
6GZZ|1|A2|C|2680
6GZZ|1|A2|C|2681
6GZZ|1|A2|G|2682
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain G2
- 50S ribosomal protein L6
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