IL_6GZZ_158

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UCGUGC*GCGG

Length

10 nucleotides

Bulged bases

6GZZ|1|A3|U|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_158 not in the Motif Atlas

Geometric match to IL_205D_001

Geometric discrepancy: 0.378

The information below is about IL_205D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6GZZ|1|A3|U|62
6GZZ|1|A3|C|63
6GZZ|1|A3|G|64
6GZZ|1|A3|U|65
6GZZ|1|A3|G|66
6GZZ|1|A3|C|67
*
6GZZ|1|A3|G|95
6GZZ|1|A3|C|96
6GZZ|1|A3|G|97
6GZZ|1|A3|G|98

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain T3

30S ribosomal protein S20